ECFP with XGBoost
Why didn't I do this from first time...
So let's recall, this is from Random Forest
and this from SVM
and lastly from XGBoost
So, XGBoost gave the best accuracy, for a contest here.
But I guess it's all about how you use the model. SVM may get better with tuning as well. Hang on... How about parameter tuning of them... (But I do want to get into SOM too...)